Author Affiliations
Abstract
We propose a high-accuracy artifacts-free single-frame digital holographic phase demodulation scheme for relatively low-carrier frequency holograms—deep learning assisted variational Hilbert quantitative phase imaging (DL-VHQPI). The method, incorporating a conventional deep neural network into a complete physical model utilizing the idea of residual compensation, reliably and robustly recovers the quantitative phase information of the test objects. It can significantly alleviate spectrum-overlapping-caused phase artifacts under the slightly off-axis digital holographic system. Compared to the conventional end-to-end networks (without a physical model), the proposed method can reduce the dataset size dramatically while maintaining the imaging quality and model generalization. The DL-VHQPI is quantitatively studied by numerical simulation. The live-cell experiment is designed to demonstrate the method's practicality in biological research. The proposed idea of the deep learning-assisted physical model might be extended to diverse computational imaging techniques.
quantitative phase imaging digital holography deep learning high-throughput imaging 
Opto-Electronic Science
2023, 2(4): 220023
Yao Fan 1,2,3Jiasong Sun 1,2,3Yefeng Shu 1,2,3Zeyu Zhang 1,2,3[ ... ]Chao Zuo 1,2,3,5,*
Author Affiliations
Abstract
1 Smart Computational Imaging (SCI) Laboratory, Nanjing University of Science and Technology, Nanjing 210094, China
2 Smart Computational Imaging Research Institute (SCIRI) of Nanjing University of Science and Technology, Nanjing 210019, China
3 Jiangsu Key Laboratory of Spectral Imaging & Intelligent Sense, Nanjing University of Science and Technology, Nanjing 210094, China
4 e-mail: chenqian@njust.edu.cn
5 e-mail: zuochao@njust.edu.cn
Quantitative phase imaging (QPI) by differential phase contrast (DPC) with partially coherent illumination provides speckle-free imaging and lateral resolution beyond the coherent diffraction limit, demonstrating great potential in biomedical imaging applications. Generally, DPC employs weak object approximation to linearize the phase-to-intensity image formation, simplifying the solution to the phase retrieval as a two-dimensional deconvolution with the corresponding phase transfer function. Despite its widespread adoption, weak object approximation still lacks a precise and clear definition, suggesting that the accuracy of the QPI results, especially for samples with large phase values, is yet to be verified. In this paper, we analyze the weak object approximation condition quantitatively and explicitly give its strict definition that is applicable to arbitrary samples and illumination apertures. Furthermore, an iterative deconvolution QPI technique based on pseudo-weak object approximation is proposed to overcome the difficulty of applying DPC to large-phase samples without additional data acquisition. Experiments with standard microlens arrays and MCF-7 cells demonstrated that the proposed method can effectively extend DPC beyond weak object approximation to high-precision three-dimensional morphological characterization of large-phase technical and biological samples.
Photonics Research
2023, 11(3): 442
Yefeng Shu 1,2,3†Jiasong Sun 1,2,3†Jiaming Lyu 4Yao Fan 1,2,3[ ... ]Chao Zuo 1,2,3,***
Author Affiliations
Abstract
1 Smart Computational Imaging Laboratory (SCILab), School of Electronic and Optical Engineering, Nanjing University of Science and Technolog, 210094, Nanjing Jiangsu Province, People’s Republic of China
2 Smart Computational Imaging Research Institute (SCIRI) of Nanjing University of Science and Technology, 210019, Nanjing Jiangsu Province, People’s Republic of China
3 Jiangsu Key Laboratory of Spectral Imaging Intelligent Sense, 210094, Nanjing Jiangsu Province, People’s Republic of China
4 Terahertz Technology Innovation Research Institute, University of Shanghai for Science and Technology, 200093 Shanghai, People’s Republic of China
5 School of Computer and Electronic Information, Nanjing Normal University, 210023, Nanjing Jiangsu Province, People’s Republic of China
6 Department of Biomedical Engineering, University of Connecticut, Storrs, Connecticut 06269, USA
PhotoniX
2022, 3(1): 27
Yefeng Shu 1,2,3†Jiasong Sun 1,2,3†Jiaming Lyu 4Yao Fan 1,2,3[ ... ]Chao Zuo 1,2,3,***
Author Affiliations
Abstract
1 Smart Computational Imaging Laboratory (SCILab), School of Electronic and Optical Engineering, Nanjing University of Science and Technolog, 210094, Nanjing Jiangsu Province, People’s Republic of China
2 Smart Computational Imaging Research Institute (SCIRI) of Nanjing University of Science and Technology, 210019, Nanjing Jiangsu Province, People’s Republic of China
3 Jiangsu Key Laboratory of Spectral Imaging Intelligent Sense, 210094, Nanjing Jiangsu Province, People’s Republic of China
4 Terahertz Technology Innovation Research Institute, University of Shanghai for Science and Technology, 200093 Shanghai, People’s Republic of China
5 School of Computer and Electronic Information, Nanjing Normal University, 210023, Nanjing Jiangsu Province, People’s Republic of China
6 Department of Biomedical Engineering, University of Connecticut, 06269, Storrs Connecticut, USA
Quantitative phase imaging (QPI) has emerged as a valuable tool for biomedical research thanks to its unique capabilities for quantifying optical thickness variation of living cells and tissues. Among many QPI methods, Fourier ptychographic microscopy (FPM) allows long-term label-free observation and quantitative analysis of large cell populations without compromising spatial and temporal resolution. However, high spatio-temporal resolution imaging over a long-time scale (from hours to days) remains a critical challenge: optically inhomogeneous structure of biological specimens as well as mechanical perturbations and thermal fluctuations of the microscope body all result in time-varying aberration and focus drifts, significantly degrading the imaging performance for long-term study. Moreover, the aberrations are sample- and environment-dependent, and cannot be compensated by a fixed optical design, thus necessitating rapid dynamic correction in the imaging process. Here, we report an adaptive optical QPI method based on annular illumination FPM. In this method, the annular matched illumination configuration (i.e., the illumination numerical aperture (NA) strictly equals to the objective NA), which is the key for recovering low-frequency phase information, is further utilized for the accurate imaging aberration characterization. By using only 6 low-resolution images captured with 6 different illumination angles matching the NA of a 10x, 0.4 NA objective, we recover high-resolution quantitative phase images (synthetic NA of 0.8) and characterize the aberrations in real time, restoring the optimum resolution of the system adaptively. Applying our method to live-cell imaging, we achieve diffraction-limited performance (full-pitch resolution of $$655\,nm$$ at a wavelength of $$525\,nm$$ ) across a wide field of view ( $$1.77\,mm^2$$ ) over an extended period of time.
PhotoniX
2022, 3(1): 24
Linpeng Lu 1,2,3,4†Jiaji Li 1,2,3,4Yefeng Shu 1,2,3,4Jiasong Sun 1,2,3,4[ ... ]Chao Zuo 1,2,3,4,*
Author Affiliations
Abstract
1 Nanjing University of Science and Technology, Smart Computational Imaging Laboratory (SCILab), Nanjing, China
2 Nanjing University of Science and Technology, School of Electronic and Optical Engineering, Nanjing, China
3 Jiangsu Key Laboratory of Spectral Imaging & Intelligent Sense, Nanjing, China
4 Nanjing University of Science and Technology, Smart Computational Imaging Research Institute (SCIRI), Nanjing, China
5 The University of Hong Kong, Department of Electrical and Electronic Engineering, Pokfulam, Hong Kong, China
Transport of intensity equation (TIE) is a well-established non-interferometric phase retrieval approach that enables quantitative phase imaging (QPI) by simply measuring intensity images at multiple axially displaced planes. The advantage of a TIE-based QPI system is its compatibility with partially coherent illumination, which provides speckle-free imaging with resolution beyond the coherent diffraction limit. However, TIE is generally implemented with a brightfield (BF) configuration, and the maximum achievable imaging resolution is still limited to the incoherent diffraction limit (twice the coherent diffraction limit). It is desirable that TIE-related approaches can surpass this limit and achieve high-throughput [high-resolution and wide field of view (FOV)] QPI. We propose a hybrid BF and darkfield transport of intensity (HBDTI) approach for high-throughput quantitative phase microscopy. Two through-focus intensity stacks corresponding to BF and darkfield illuminations are acquired through a low-numerical-aperture (NA) objective lens. The high-resolution and large-FOV complex amplitude (both quantitative absorption and phase distributions) can then be synthesized based on an iterative phase retrieval algorithm taking the coherence model decomposition into account. The effectiveness of the proposed method is experimentally verified by the retrieval of the USAF resolution target and different types of biological cells. The experimental results demonstrate that the half-width imaging resolution can be improved from 1230 nm to 488 nm with 2.5 × expansion across a 4 × FOV of 7.19 mm2, corresponding to a 6.25 × increase in space-bandwidth product from ∼5 to ∼30.2 megapixels. In contrast to conventional TIE-based QPI methods where only BF illumination is used, the synthetic aperture process of HBDTI further incorporates darkfield illuminations to expand the accessible object frequency, thereby significantly extending the maximum available resolution from 2NA to ∼5NA with a ∼5 × promotion of the coherent diffraction limit. Given its capability for high-throughput QPI, the proposed HBDTI approach is expected to be adopted in biomedical fields, such as personalized genomics and cancer diagnostics.
transport of intensity equation phase retrieval darkfield imaging high-throughput microscopy 
Advanced Photonics
2022, 4(5): 056002
作者单位
摘要
南京理工大学 电子工程与光电技术学院,江苏 南京 210094
计算光学显微成像技术将光学编码和计算解码相结合,通过光学操作和图像算法重建来恢复微观物体的多维信息,为显微成像技术突破传统成像能力提供了强大的助力。这项技术的发展得益于现代光学系统、图像传感器以及高性能数据处理设备的优化,同时也被先进的通信技术和设备的发展所赋能。智能手机平台作为高度集成化的电子设备,具有先进的图像传感器和高性能的处理器,可以采集光学系统的图像并运行图像处理算法,为计算光学显微成像技术的实现创造了全新的方式。进一步地,作为可移动通信终端,智能手机平台开放的操作系统和多样的无线网络接入方法,赋予了显微镜灵活智能化操控能力与丰富的显示和处理分析功能,可用于实现各种复杂环境下多样化的生物学检测应用。文中从四个方面综述了基于智能手机平台的计算光学显微成像技术,首先综述了智能手机平台作为光学成像器件的新型显微成像光路设计,接下来介绍了基于智能手机平台先进传感器的计算光学高通量显微成像技术,然后介绍了智能手机平台的数据处理能力和互联能力在计算显微成像中的应用,最后讨论了这项技术现存在的一些问题及解决方向。
智能手机平台 计算光学显微成像 无线传输 即时检验 smartphone platform computational optical microscopy imaging wireless transmission point-of-care testing 
红外与激光工程
2022, 51(2): 20220095
Yao Fan 1,2,3,4†Jiaji Li 1,2,3,4†Linpeng Lu 1,2,3,4†Jiasong Sun 1,2,3,4†[ ... ]Chao Zuo 1,2,3,4,**
Author Affiliations
Abstract
1 School of Electronic and Optical Engineering, Nanjing University of Science and Technology, No. 200 Xiaolingwei Street, Nanjing, Jiangsu Province 210094, China
2 Jiangsu Key Laboratory of Spectral Imaging & Intelligent Sense, Nanjing University of Science and Technology, No. 200 Xiaolingwei Street, Nanjing, Jiangsu Province 210094, China
3 Smart Computational Imaging (SCI) Laboratory, Nanjing University of Science and Technology, No. 200 Xiaolingwei Street, Nanjing, Jiangsu Province 210094, China
4 Smart Computational Imaging Research Institute (SCRI) of Nanjing University of Science and Technology, Nanjing, Jiangsu Province 210019, China
Computational microscopy, as a subfield of computational imaging, combines optical manipulation and image algorithmic reconstruction to recover multi-dimensional microscopic images or information of micro-objects. In recent years, the revolution in light-emitting diodes (LEDs), low-cost consumer image sensors, modern digital computers, and smartphones provide fertile opportunities for the rapid development of computational microscopy. Consequently, diverse forms of computational microscopy have been invented, including digital holographic microscopy (DHM), transport of intensity equation (TIE), differential phase contrast (DPC) microscopy, lens-free on-chip holography, and Fourier ptychographic microscopy (FPM). These computational microscopy techniques not only provide high-resolution, label-free, quantitative phase imaging capability but also decipher new and advanced biomedical research and industrial applications. Nevertheless, most computational microscopy techniques are still at an early stage of “proof of concept” or “proof of prototype” (based on commercially available microscope platforms). Translating those concepts to stand-alone optical instruments for practical use is an essential step for the promotion and adoption of computational microscopy by the wider bio-medicine, industry, and education community. In this paper, we present four smart computational light microscopes (SCLMs) developed by our laboratory, i.e., smart computational imaging laboratory (SCILab) of Nanjing University of Science and Technology (NJUST), China. These microscopes are empowered by advanced computational microscopy techniques, including digital holography, TIE, DPC, lensless holography, and FPM, which not only enables multi-modal contrast-enhanced observations for unstained specimens, but also can recover their three-dimensional profiles quantitatively. We introduce their basic principles, hardware configurations, reconstruction algorithms, and software design, quantify their imaging performance, and illustrate their typical applications for cell analysis, medical diagnosis, and microlens characterization.
PhotoniX
2021, 2(1): 19
张润南 1,2,3蔡泽伟 1,2,3,**孙佳嵩 1,2,3卢林芃 1,2,3[ ... ]左超 1,2,3,*
作者单位
摘要
1 智能计算成像实验室, 南京理工大学电子工程与光电技术学院, 江苏 南京210094
2 南京理工大学智能计算成像研究院, 江苏 南京210019
3 江苏省光谱成像与智能感知重点实验室, 江苏 南京 210094

光场的相干性是定量衡量其产生显著的干涉现象所具备的重要物理属性。尽管高时空相干性的激光已成为传统干涉计量与全息成像等领域不可或缺的重要工具,但在众多新兴的计算成像领域(如计算摄像、计算显微成像),降低光源的相干性,即部分相干光源在获得高信噪比、高分辨率的图像信息方面具有独特优越性。因此,部分相干光场的“表征”与“重建”两方面问题的重要性日益凸显,亟需引入光场相干性理论及相干测量技术来回答计算成像中“光应该是什么”和“光实际是什么”的两大关键问题。在此背景下,系统地综述了光场相干性理论及相干测量技术,从经典的关联函数理论与相空间光学理论出发,阐述了对应的干涉相干测量法与非干涉相干恢复法的基本原理与典型光路结构;介绍了由相干测量所衍生出的若干计算成像新体制及其典型应用,如光场成像、非干涉相位复原、非相干全息术、非相干合成孔径、非相干断层成像等;论述了相干测量技术现阶段所面临的问题与挑战,并展望了其未来的发展趋势。

成像系统 相干与统计光学 相干成像 部分相干成像 计算成像 
激光与光电子学进展
2021, 58(18): 1811003
作者单位
摘要
南京理工大学 电子工程与光电技术学院, 江苏 南京 210094
差分相衬(Differential phase contrast, DPC)成像是一种基于部分相干照明调控的无标记非干涉相位成像方法, 它为未染色透明样品提供了一种快速、有效且高分辨率的可视化手段。DPC通过多次非对称照明调控或非对称孔径调制使不可见的样品相位信息转换为成像器件可直接探测的强度信号, 从而为定性相衬成像甚至定量相位重建提供了可能。近年来, 随着该领域研究的逐步深入, 成像的相位传递函数得以明确推导, DPC已经逐步从定性观察走向了定量研究。另一方面, 得益于全孔径照明调控和高效相位反卷积算法, DPC定量相位成像的空间分辨率可达到非相干衍射极限, 并能够获得低噪声、高精度的定量相位重构结果。通过与三维光学传递函数理论交融借鉴, DPC最近已被进一步拓展到了三维衍射层析领域, 实现了厚样品三维折射率的定量成像。文中从DPC成像方法的基本原理、成像系统与算法优化等几个方面对其历史发展、研究现状和最新进展进行了详细综述, 并讨论了该方法现存的一些关键问题以及今后可能的研究方向。
定量相位成像 差分相衬 相位传递函数 衍射层析 quantitative phase imaging differential phase contrast phase transfer function diffraction tomography 
红外与激光工程
2019, 48(6): 0603014
作者单位
摘要
南京理工大学 电子工程与光电技术学院, 江苏 南京 210094
同时实现大视场、高分辨率成像是光学显微技术发展至今不断追求的永恒目标。传统光学显微镜由于其光学设计原理限制, 空间带宽积一般总是限制在百万像素量级, 从而无法同时兼顾高分辨率与大视场。另一方面, 复杂的光学系统也使显微镜变得日趋昂贵、笨重、复杂且难以维护, 极大地限制了其推广和应用。无透镜片上显微成像技术是近年来发展出的一种新概念计算成像技术: 其不利用成像透镜聚焦, 而直接将所观测的样本紧贴于成像器件光敏面上方记录图像, 并结合相应的图像恢复算法实现清晰物像的反演与重构。由于具有视野大、分辨率高、无需标记、成本低、便携性好和可实现三维(3D)成像等优点, 无透镜片上显微镜有望拓展传统显微成像技术的疆界, 成为一种新型的快捷、便携的就地检验(POCT)工具。文中从无透镜成像基本原理、实验系统、重构方法及其典型应用进行了综述。最后, 讨论了无透镜显微成像现存的一些关键问题以及今后可能的发展方向。
无透镜 数字全息显微 相位恢复 显微成像 lens-free digital holographic microscopy phase retrieval microscopy 
红外与激光工程
2019, 48(6): 0603009

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